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| BioMechanics | Birth Mechanics | Tara Johnson | Robert Allen | Robert Allen (BME); Edith Gurewitsch (Ob/Gyn); Steve Belkoff (Mech E); Jerry Prince (ECE); Artin Shoukas (BME) | Uterine forces (my research); Study design/Basic Epidemiology; In-depth questions about my research; Medical imaging systems - Chemistry behind X-rays, CT theorems; How the body adapts to hemorrhage |
| Cardiovascular Systems | Cardiovascular + Low-Gravity | Eric Tuday | Art Shoukas | Lawrence Schramm; Art Shoukas; Markus Hilpert; Jon Lorsch; Tim Weihs | cardiovascular systems; autonomic nervous system; partial differential equations; wave equation; first section of molecules and cells; structural properties of materials |
| Cardiovascular Systems | Electrophysiology | Seth Weinberg | Leslie Tung | Leslie Tung (BME); Mark Shelhamer (Otolaryngology, BME); Ron Berger (Cardiology); Joseph Greenstein (BME); Rajini Rao (Physiology) | cardiac electrophysiology; nonlinear dynamics; cardiac arrhythmia mechanisms; calcium cycling; ion channels and transporters |
| Cardiovascular Systems | Cardiovascular Electrophysiology | Josh Cysyk | Les Tung | Les Tung; Andreas Andreou; David Yue; Mark Shelhammer; Ron Berger | cardiac electrophysiology; semiconductor devices; calcium channels; nonlinear dynamics; cardiology |
| Cardiovascular Systems | Computational Cardiac Electrophysiology | Molly Maleckar | Natalia Trayanova, PhD | Dr. Natalia Trayanova (BME); Dr. Raimond Winslow (BME); Dr. Joseph Greenstein (BME); Dr. Henry Halperin (SOM); Dr. Brian O'Rourke (SOM) | Membrane channels (specifically cardiac); Circuit theory as it related to biophysical modeling; Questions relating to specific theories underlying the excitation of cardiac tissue; Myocardial remodeling in the context of disease |
| Cardiovascular Systems | Electromechanics, Modeling | Jason Constantino | Natalia Trayanova, PhD | Natalia Trayanova (BME); Leslie Tung (BME); Albert Lardo (Medicine);Vicky Nguyen(Mech E); Narutoshi Nakata (Civil E) | Action Potential and currents; Extrusion Mechanisms; F-SL relationship; Frank Starling Mechanism; Continuum Mechanics; Conservation of Momentum; Finite Element Method (general); Isoparametric Elements |
| Computational Biology | Computational Biology, Bioinformatics | Donavan Cheng | Mike Beer | Mike Beer; Andre Levchenko; Wilson Rugh; Shih-Ping Han; Paul Maiste | k-means clustering; optimization; KKT conditions; linear vs. nonlinear system stability |
| Medical Imaging | Molecular Imaging | Chris Long | Jeff Bulte | Justin Hanes; Chuck Drake; Kevin Yarema; Kostas Konstantopolous; Mark Teaford | drug delivery; immunology; sugar stuff; receptor ligand biophysics; anatomy |
| Medical Imaging | MRI, Diffusion Tensor Imaging (DTI), Image Analysis | Bennett Landman | Jerry Prince | Susumu Mori (Radiology/BME); Sarah Ying (Neurology); Larry Schramm (BME); Carey Priebe (Applied Math); Jerry Prince (ECE/BME) | MRI (why is MRI noisy) and Fourier transforms (graphical Fourier transforms); Neurodegeneration and MR imaging thereof (what is it, how do we image it, what are we imaging); Neuroscience/systems anatomy (focus on the motor system); Statistics: Neyman Pearson, generalized maximum likelihood, nonparametric Monte Carlo, etc.; Anything in my or Dr. Prince's background. |
| Medical Imaging | MRI of Perfusion | Alan Huang | Peter van Zijl | Susumu Mori; Nitish Thakor; Brian Caffo; Edward Hedgecock; Peter van Zijl; Alternates: Paul Fuchs; Dwight Bergles | Fourier transform theory and properties; EEG instrumentation and issues when combined with fMRI (instrumentation, electrodes, noise, patient safety); TILT pulse sequence, ROC curve, sensitivity, specificity, hypothesis testing; anatomy and physiology of a neuron, thalamic relay neurons, visual pathway from eye to V1, structure of a retina (layers), basal ganglia pathways (direct and indirect), where currents and voltages in the brain come from; MRI physics, structure of a pulse sequence; synaptic transmission; neurotransmitters |
| Medical Imaging | MRI of the CNS | Issel Anne Lim | Peter van Zijl | Peter van Zijl; Lawrence Schramm; Susumu Mori; Amy Bastian; Brian Caffo; Alternates: Henry Colecraft; Stewart Hendry | basics of MRI signal generation; spinal cord tracts and cross-sectional anatomy; diffusion coefficients, Fourier transforms, diagramming a cell; central pattern generators and reflexes; biostatistics, hypothesis testing, gambling odds and probability |
| Molecular and Cell Systems | BioMEMS / SMD | Kelvin Liu | Jeff Wang | Jeff Wang; Markus Hilpert; Mandy Ward; Ludwig Brand; Sean Sun | single molecule detection bioMEMS; confocal spectroscopy |
| Molecular and Cell Systems | BioMEMs; Microfluidics; CNS, Axon Degeneration | Suneil Hosmane | Nitish Thakor, PhD | Andreas Andreou, PhD (ECE); Jeff Wang, PhD (MechE); Nitish Thakor, PhD (BME); Arun Venkatesan, MD, PhD (Neurology); Fizan Abdullah, MD, PhD (Pediatric Surgery) | Andreou - Fick's Law, Diffusion; Wang - Stoke's Law, Hydrostatics, Particle Flow; Thakor - Microfluidics, Gradient Generation; Venkatesan - Developmental Neurobiology, Genetics, Molecular Biology; Abdullah - Microfluidics, Immunology |
| Systems Neuroscience | Calcium Channels | Ivy Dick | David Yue | David Yue; Nick Marsh-Armstrong; Eric Young; Markus Hilpert; Dr. Neiman | calcium channels; neuroscience (developmental); ion channel models; PDEs; probability and statistics |
| Systems Neuroscience | Computational Neuroscience, Auditory Neurophysiology | John Issa | David Yue | Jim Fill, Paul Fuchs, Howard Weinert, David Yue, Kechen Zhang; Alternates: Donniell Fishkind, Eric Young | Markov models and definitions, structure and function of the cochlea, DTFT and DFT, synaptic plasticity (Hebb's rule, etc.) and single-channel recordings, Hopfield networks |
| Systems Neuroscience | Spinal Cord Regeneration and Myelination | Misti Marr | John McDonald, Lawrence Schramm | Lawrence Schramm; Henry Colecraft; John Wierman, Rejji Kuruvilla, Emanuel Horowitz; Alternates: Martin Oudega, Andres Andreou | spinal cord pathways and research methods; calcium concentrations, channels, and synapses; lack of memory and geometric series; tyrosine receptor kinases and signalling; biocompatibility, methods of failure |
| Systems Neuroscience | Spinal Cord Regeneration | Debbie Castillo | Lawrence Schramm | Lawrence Schramm; Henry Colecraft; Amy Bastian; Dan Berkowitz; John Wierman; Alternates: Eric Young; Jay Baraban | spinal cord pathways and research; calcium signals and ionic channels; CPGs and cerebellar circuits; cardio and smooth mm; probability and statistics |
| Systems Neuroscience | Auditory Neurophysiology | Luke Johnson | Xiaoqin Wang, PhD | Jim Fill - Chair (Applied Math); Markus Hilpert (Geography + Environmental Eng); Brad May (Oto-Head-Neck Surgery); Xiaoqin Wang (BME); Eric Young (BME); | Jim Fill - Poisson Process, Renewal Process, Random Variables in a plane; Markus Hilpert- PDE's, Heat equation; Brad May - processing at each stage of auditory pathway; Xiaoqin Wang - action potential, information content in spike train; Eric Young (BME) - information theory |