GBO Committees

Academic information from graduate students in biomedical engineering


Research Areas




GBO Requirements

  • Requirements, as determined by the Hopkins GBO Committee:
    • According to this memo from the GBO Board, at least THREE WEEKS BEFORE your GBO exam date, you need to turn in the BME2007_GBO_FORM (.pdf) (Also available on the Download page)
    • 1) The faculty members eligible to sit on a Graduate Board Exam are strictly limited, generally to full-time faculty at the level of Assistant Professor and above in degree-granting departments; it is difficult to obtain permission for a member of a clinical department or a faculty member from the part-time (evening college) programs;
    • 2) At least two of the examiners must be from outside the student's program; for BME, inside examiners are any member of the BME Department or the BME Committee.
    • 3) There must be at least one associate or full professor on the committee.
    • PhD Handbook: GBO Requirements
  • Summary of Requirements:
    • Committee Members: two professors from within the Biomedical Engineering Department and three from outside the BME Dept
    • Committee Chairman: will be the highest-ranking (Associate Professor or Professor) outside faculty member on the committee that is not your research advisor
    • Content: must include some engineering, some math, and some biology
    • Paperwork: at least THREE WEEKS BEFORE the GBO, you need to download the GBO form and turn it into Hong Lan, our course administrator; she'll turn it into the Hopkins GBO Committee, and hopefully they'll approve your committee. If they don't approve it, then you need to revise your committee members according to their requirements.
  • Link to Previous GBO Committees:
  • Helpful Tips:
    • Take at least a month off from lab and study.
    • Schedule a "Mock GBO" a week or more before your "real" GBO. Look through the lists for students who've had the same professors on their committees. Ask them to act like the professors and drill you with questions. (This REALLY helps.)
    • Arrange for coffee and/or refreshments for your committee members. That way, no one will be grouchy or hungry while testing you. If you're doing your GBO in Talbot Library on the JHMI campus, you can schedule a catering-ish event w/ the Daily Grind (located in Broadway Research Building).



BioMEMS

Kelvin Liu: BioMEMS / SMD
  • Council Members: Jeff Wang; Markus Hilpert; Mandy Ward; Ludwig Brand; Sean Sun
  • Research Areas / Questions: single molecule detection bioMEMS; confocal spectroscopy



BioMechanics

Tara Johnson: Birth Mechanics
  • Council Members: Robert Allen (BME); Edith Gurewitsch (Ob/Gyn); Steve Belkoff (Mech E); Jerry Prince (ECE); Artin Shoukas (BME)
  • Alternates: Nitish Thakor, John Goutsias
  • Research Areas / Questions: Uterine forces (my research); Study design/Basic Epidemiology; In-depth questions about my research; Medical imaging systems - Chemistry behind X-rays, CT theorems; How the body adapts to hemorrhage



Cardiovascular

Eric Tuday: Cardiovascular
  • Council Members: Lawrence Schramm; Art Shoukas; Markus Hilpert; Jon Lorsch; Tim Weihs
  • Research Areas / Questions: cardiovascular systems; autonomic nervous system; partial differential equations; wave equation; first section of molecules and cells; structural properties of materials
Josh Cysyk: Cardiac Electrophysiology
  • Council Members: Les Tung; Andreas Andreou; David Yue; Mark Shelhammer; Ron Berger
  • Research Areas / Questions: cardiac electrophysiology; semiconductor devices; calcium channels; nonlinear dynamics; cardiology



Cell and Tissue Engineering

Ivy Dick: Calcium Channels
  • Council Members: David Yue; Nick Marsh-Armstrong; Eric Young; Markus Hilpert; Dr. Neiman
  • Research Areas / Questions: calcium channels; neuroscience (developmental); ion channel models; PDEs; probability and statistics
Debbie Castillo: Spinal Cord Regeneration
  • Council Members: Lawrence Schramm; Henry Colecraft; Amy Bastian; Dan Berkowitz; John Wierman
  • Alternates: Eric Young; Jay Baraban
  • Research Areas / Questions: spinal cord pathways and research; calcium signals and ionic channels; CPGs and cerebellar circuits; cardio and smooth mm; probability and statistics
Misti Malone: Spinal Cord Regeneration and Myelination
  • Advisor: John McDonald in the International Spinal Cord Institute and Lawrence Schramm in Biomedical Engineering
  • Council Members: Lawrence Schramm; Henry Colecraft; John Wierman, Rejji Kuruvilla, Emanuel Horowitz
  • Alternates: Martin Oudega, Andres Andreou
  • Research Areas / Questions: spinal cord pathways and research methods; calcium concentrations, channels, and synapses; lack of memory and geometric series; tyrosine receptor kinases and signalling; biocompatibility, methods of failure



Computational Biology

Donavan Cheng: Computational Biology
  • Council Members: Mike Beer; Andre Levchenko; Wilson Rugh; Shih-Ping Han; Paul Maiste
  • Research Areas / Questions: k-means clustering; optimization; KKT conditions; linear vs. nonlinear system stability
John Issa: Systems & Computational Neuroscience
  • Council Members: Jim Fill, Paul Fuchs, Howard Weinert, David Yue, Kechen Zhang Alternates: Donniell Fishkind, Eric Young
  • Research Areas/Questions: Markov models and definitions, structure and function of the cochlea, DTFT and DFT, synaptic plasticity (Hebb's rule, etc.) and single-channel recordings, Hopfield networks



Imaging

Chris Long: Molecular Imaging
  • Council Members: Justin Hanes; Chuck Drake; Kevin Yarema; Kostas Konstantopolous; Mark Teaford
  • Research Areas / Questions: drug delivery; immunology; sugar stuff; receptor ligand biophysics; anatomy
Bennett Landman: MRI, Diffusion Tensor Imaging (DTI), Image Analysis
  • Advisor: Jerry Prince (ECE/BME)
  • Council Members: Susumu Mori (Radiology/BME); Sarah Ying (Neurology); Larry Schramm (BME); Carey Priebe (Applied Math); Jerry Prince (ECE/BME)
  • Research Areas / Questions: MRI (why is MRI noisy) and Fourier transforms (graphical Fourier transforms); Neurodegeneration and MR imaging thereof (what is it, how do we image it, what are we imaging); Neuroscience/systems anatomy (focus on the motor system); Statistics: Neyman Pearson, generalized maximum likelihood, nonparametric Monte Carlo, etc.; Anything in my or Dr. Prince's background.
Issel Lim: Magnetic Resonance Imaging (MRI) of the Spinal Cord
  • Council Members: Peter van Zijl; Lawrence Schramm; Susumu Mori; Amy Bastian; Brian Caffo
  • Alternates: Henry Colecraft; Stewart Hendry
  • Research Areas / Questions: basics of MRI signal generation; spinal cord tracts and cross-sectional anatomy; diffusion coefficients, Fourier transforms, diagramming a cell; central pattern generators and reflexes; biostatistics, hypothesis testing, gambling odds and probability
Alan Huang: Magnetic Resonance Imaging (MRI) of Perfusion
  • Council Members: Susumu Mori; Nitish Thakor; Brian Caffo; Edward Hedgecock; Peter van Zijl
  • Alternates: Paul Fuchs; Dwight Bergles
  • Research Areas / Questions: Fourier transform theory and properties; EEG instrumentation and issues when combined with fMRI (instrumentation, electrodes, noise, patient safety); TILT pulse sequence, ROC curve, sensitivity, specificity, hypothesis testing; anatomy and physiology of a neuron, thalamic relay neurons, visual pathway from eye to V1, structure of a retina (layers), basal ganglia pathways (direct and indirect), where currents and voltages in the brain come from; MRI physics, structure of a pulse sequence; synaptic transmission; neurotransmitters



Neuroengineering

Debbie Castillo: Spinal Cord Regeneration
  • Council Members: Lawrence Schramm; Henry Colecraft; Amy Bastian; Dan Berkowitz; John Wierman
  • Alternates: Eric Young; Jay Baraban
  • Research Areas / Questions: spinal cord pathways and research; calcium signals and ionic channels; CPGs and cerebellar circuits; cardio and smooth mm; probability and statistics
Bennett Landman: MRI, Diffusion Tensor Imaging (DTI), Image Analysis
  • Advisor: Jerry Prince (ECE/BME)
  • Council Members: Susumu Mori (Radiology/BME); Sarah Ying (Neurology); Larry Schramm (BME); Carey Priebe (Applied Math); Jerry Prince (ECE/BME)
  • Research Areas / Questions: MRI (why is MRI noisy) and Fourier transforms (graphical Fourier transforms); Neurodegeneration and MR imaging thereof (what is it, how do we image it, what are we imaging); Neuroscience/systems anatomy (focus on the motor system); Statistics: Neyman Pearson, generalized maximum likelihood, nonparametric Monte Carlo, etc.; Anything in my or Dr. Prince's background.
Issel Lim: Magnetic Resonance Imaging (MRI) of the Spinal Cord
  • Council Members: Peter van Zijl; Lawrence Schramm; Susumu Mori; Amy Bastian; Brian Caffo
  • Alternates: Henry Colecraft; Stewart Hendry
  • Research Areas / Questions: basics of MRI signal generation; spinal cord tracts and cross-sectional anatomy; diffusion coefficients, Fourier transforms, diagramming a cell; central pattern generators and reflexes; biostatistics, hypothesis testing, gambling odds and probability
John Issa: Systems & Computational Neuroscience
  • Council Members: Jim Fill, Paul Fuchs, Howard Weinert, David Yue, Kechen Zhang Alternates: Donniell Fishkind, Eric Young
  • Research Areas / Questions: Markov models and definitions, structure and function of the cochlea, DTFT and DFT, synaptic plasticity (Hebb's rule, etc.) and single-channel recordings, Hopfield networks
Misti Malone: Spinal Cord Regeneration and Myelination
  • Advisor: John McDonald in the International Spinal Cord Institute and Lawrence Schramm in Biomedical Engineering
  • Council Members: Lawrence Schramm; Henry Colecraft; John Wierman, Rejji Kuruvilla, Emanuel Horowitz
  • Alternates: Martin Oudega, Andres Andreou
  • Research Areas / Questions: spinal cord pathways and research methods; calcium concentrations, channels, and synapses; lack of memory and geometric series; tyrosine receptor kinases and signalling; biocompatibility, methods of failure
Alan Huang: Magnetic Resonance Imaging (MRI) of Perfusion
  • Council Members: Susumu Mori; Nitish Thakor; Brian Caffo; Edward Hedgecock; Peter van Zijl
  • Alternates: Paul Fuchs; Dwight Bergles
  • Research Areas / Questions: Fourier transform theory and properties; EEG instrumentation and issues when combined with fMRI (instrumentation, electrodes, noise, patient safety); TILT pulse sequence, ROC curve, sensitivity, specificity, hypothesis testing; anatomy and physiology of a neuron, thalamic relay neurons, visual pathway from eye to V1, structure of a retina (layers), basal ganglia pathways (direct and indirect), where currents and voltages in the brain come from; MRI physics, structure of a pulse sequence; synaptic transmission; neurotransmitters



Notes

For more details, email the graduate students listed here. The PhD Council Webmaster does not claim responsibility for misspellings; however, if you spot a mistake, please send us an email.


Questions/Comments/News: Email our webmaster, Issel Lim.
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Most Recent Update: 03/24/2008